ImageJ Plugins and Macros and MATLAB Scripts

  • Find Ridges
  • Generalized Polarization Analysis   I(Blue)-I(Green)/I(Blue)+I(Green).
  • Helmholtz Analysis   Get wavelength and orientiation of periodic structures.
  • Ellipse ROI
  • Live Histogram
  • Measure Stack
  • Multi Measure
  • Layers
  • Stack Sorter
  • Measure Roi
  • Polynomial Fit
  • Polynomial Shading Corrector
  • PLOT3D I/O   (.unf file reader and writer)
  • 3D Fast Hartley Transform
  • Swap Quadrants 3D   Use with FHT3D for an alternate Hartley coefficeint order.
  • Convolve 3D
  • Iterative Deconvolve 3D   Called DAMAS3 in aeroacoustics.
  • Diffraction PSF 3D
  • 3D Local Thickness and Distance Map
  • MicroArray Profile
  • Beamforming macros ImageJ macros to automate OptiNav beamforming software.
  • MATLAB scripts Utilities for reading OptiNav beamforming files.
  • More plugins

    Links

  • ImageJ site
  • Another ImageJ site This one emphasizes ImageJ2.
  • BoneJ A plugin for bone image analysis in ImageJ which uses Local Thickness.